This is definitely reproducible. You don't have to crash a server and there isn't any associated crash report to turn in. It only happens when turtles are moving and maybe only on servers. In our case we are using the Mindcrack mod pack from the FTB Launcher, though I've also encountered the problem in testing with the BetaA and Direwolf20 packs. If the chunk is unloaded while the turtles are moving there is a high probability that the turtle will be reset and lose all peripherals, programs, label, etc... From what I can tell it occurs because the turtle block get separated from its TileEntity momentarily when it is moving. When the chunk is reloaded, the block can't find its Tile Entity so reverts to a basic turtle.
Again, this happens if the chunk is unloaded for any reason: crash, normal shutdown, player leaves the area, etc...
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